Package ca.ualberta.stothard.cgview

Interface CgviewConstants

All Known Implementing Classes:
Cgview, CgviewFactory, CgviewFactoryPtt, CgviewFactoryTab, CgviewHTMLDocument, CgviewIO, Feature, FeatureRange, FeatureSlot, InnerLabel, Label, LabelBounds, Legend, LegendItem, OuterLabel, Plasmid, SeriesImage
public interface CgviewConstants
The CgviewConstants interface provides constants for use in the ca.ualberta.stothard.cgview package.
Author:
Paul Stothard

  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    static final int
    BASES
    Indicates that the Cgview sequence ruler should be shown in base pair units.
    static final int
    BOUNDS_BUTTON
    Indicates that the labelBounds encloses a button.
    static final int
    BOUNDS_FEATURE
    Indicates that the labelBounds encloses a feature label.
    static final int
    BOUNDS_RULER
    Indicates that the LabelBounds encloses a tick mark.
    static final int
    CENTISOMES
    Indicates that the Cgview sequence ruler should be shown in centisome units.
    static final int
    DECORATION_CLOCKWISE_ARROW
    Indicates that the Feature or FeatureRange should be drawn as an arc with an arrowhead at the end.
    static final int
    DECORATION_COUNTERCLOCKWISE_ARROW
    Indicates that the Feature or FeatureRange should be drawn as an arc with an arrowhead at the beginning.
    static final int
    DECORATION_HIDDEN
    Indicates that the Feature or FeatureRange should not be drawn.
    static final int
    DECORATION_STANDARD
    Indicates that the Feature or FeatureRange should be drawn as a simple arc.
    static final int
    DIRECT_STRAND
    Represents the direct strand.
    static final int
    INNER_LABELS_AUTO
    Indicates that labels should be shown be drawn on the inside of the backbone if they are in a reverse-strand FeatureSlot and a zoomed map is generated.
    static final int
    INNER_LABELS_NO_SHOW
    Indicates that all labels should be drawn on the outside of the backbone.
    static final int
    INNER_LABELS_SHOW
    Indicates that labels should be drawn on the inside of the backbone if they are in a reverse-strand FeatureSlot.
    static final int
    LABEL
    Indicates that labels are to be created.
    static final int
    LABEL_FORCE
    Indicates that a label is to be drawn even if there is insufficient space.
    static final int
    LABEL_NONE
    Indicates that no labels are to be created.
    static final int
    LABEL_ZOOMED
    Indicates that labels are to be drawn only when a zoomed map is generated.
    static final int
    LEGEND_DRAW_ZOOMED
    Indicates that the Legend should be drawn when zoomed.
    static final int
    LEGEND_ITEM_ALIGN_CENTER
    Indicates that the LegendItem text should be aligned to the center.
    static final int
    LEGEND_ITEM_ALIGN_LEFT
    Indicates that the LegendItem text should be aligned to the left.
    static final int
    LEGEND_ITEM_ALIGN_RIGHT
    Indicates that the LegendItem text should be aligned to the right.
    static final int
    LEGEND_LOWER_CENTER
    Indicates that the Legend should be drawn in the lower center portion of the map.
    static final int
    LEGEND_LOWER_LEFT
    Indicates that the Legend should be drawn in the lower left portion of the map.
    static final int
    LEGEND_LOWER_RIGHT
    Indicates that the Legend should be drawn in the lower right portion of the map.
    static final int
    LEGEND_MIDDLE_CENTER
    Indicates that the Legend should be drawn in the middle center portion of the map.
    static final int
    LEGEND_MIDDLE_LEFT
    Indicates that the Legend should be drawn in the middle left portion of the map.
    static final int
    LEGEND_MIDDLE_LEFT_OF_CENTER
    Indicates that the Legend should be drawn left of the middle left portion of the map.
    static final int
    LEGEND_MIDDLE_RIGHT
    Indicates that the Legend should be drawn in the middle right portion of the map.
    static final int
    LEGEND_MIDDLE_RIGHT_OF_CENTER
    Indicates that the Legend should be drawn right of the middle right portion of the map.
    static final int
    LEGEND_NO_DRAW_ZOOMED
    Indicates that the Legend should not be drawn when zoomed.
    static final int
    LEGEND_UPPER_CENTER
    Indicates that the Legend should be drawn in the upper center portion of the map.
    static final int
    LEGEND_UPPER_LEFT
    Indicates that the Legend should be drawn in the upper left portion of the map.
    static final int
    LEGEND_UPPER_RIGHT
    Indicates that the Legend should be drawn in the upper right portion of the map.
    static final int
    POSITIONS_AUTO
    Indicates that labels should be shown with position information only when a zoomed map is generated.
    static final int
    POSITIONS_NO_SHOW
    Indicates that labels should not be shown with position information.
    static final int
    POSITIONS_SHOW
    Indicates that labels should be shown with position information.
    static final int
    REVERSE_STRAND
    Represents the reverse strand.
    static final int
    SWATCH_NO_SHOW
    Indicates that the LegendItem should be drawn without a color swatch.
    static final int
    SWATCH_SHOW
    Indicates that the LegendItem should be drawn with a color swatch.

  • Field Details

    • DIRECT_STRAND

      static final int DIRECT_STRAND
      Represents the direct strand.
      See Also:

    • REVERSE_STRAND

      static final int REVERSE_STRAND
      Represents the reverse strand.
      See Also:

    • LABEL_NONE

      static final int LABEL_NONE
      Indicates that no labels are to be created.
      See Also:

    • LABEL

      static final int LABEL
      Indicates that labels are to be created.
      See Also:

    • LABEL_FORCE

      static final int LABEL_FORCE
      Indicates that a label is to be drawn even if there is insufficient space.
      See Also:

    • LABEL_ZOOMED

      static final int LABEL_ZOOMED
      Indicates that labels are to be drawn only when a zoomed map is generated.
      See Also:

    • POSITIONS_SHOW

      static final int POSITIONS_SHOW
      Indicates that labels should be shown with position information.
      See Also:

    • POSITIONS_NO_SHOW

      static final int POSITIONS_NO_SHOW
      Indicates that labels should not be shown with position information.
      See Also:

    • POSITIONS_AUTO

      static final int POSITIONS_AUTO
      Indicates that labels should be shown with position information only when a zoomed map is generated.
      See Also:

    • INNER_LABELS_SHOW

      static final int INNER_LABELS_SHOW
      Indicates that labels should be drawn on the inside of the backbone if they are in a reverse-strand FeatureSlot.
      See Also:

    • INNER_LABELS_NO_SHOW

      static final int INNER_LABELS_NO_SHOW
      Indicates that all labels should be drawn on the outside of the backbone.
      See Also:

    • INNER_LABELS_AUTO

      static final int INNER_LABELS_AUTO
      Indicates that labels should be shown be drawn on the inside of the backbone if they are in a reverse-strand FeatureSlot and a zoomed map is generated.
      See Also:

    • BASES

      static final int BASES
      Indicates that the Cgview sequence ruler should be shown in base pair units.
      See Also:

    • CENTISOMES

      static final int CENTISOMES
      Indicates that the Cgview sequence ruler should be shown in centisome units.
      See Also:

    • DECORATION_STANDARD

      static final int DECORATION_STANDARD
      Indicates that the Feature or FeatureRange should be drawn as a simple arc.
      See Also:

    • DECORATION_COUNTERCLOCKWISE_ARROW

      static final int DECORATION_COUNTERCLOCKWISE_ARROW
      Indicates that the Feature or FeatureRange should be drawn as an arc with an arrowhead at the beginning.
      See Also:

    • DECORATION_CLOCKWISE_ARROW

      static final int DECORATION_CLOCKWISE_ARROW
      Indicates that the Feature or FeatureRange should be drawn as an arc with an arrowhead at the end.
      See Also:

    • DECORATION_HIDDEN

      static final int DECORATION_HIDDEN
      Indicates that the Feature or FeatureRange should not be drawn. This setting is typically used when only a label is needed (a restriction site for example).
      See Also:

    • SWATCH_SHOW

      static final int SWATCH_SHOW
      Indicates that the LegendItem should be drawn with a color swatch.
      See Also:

    • SWATCH_NO_SHOW

      static final int SWATCH_NO_SHOW
      Indicates that the LegendItem should be drawn without a color swatch.
      See Also:

    • LEGEND_UPPER_LEFT

      static final int LEGEND_UPPER_LEFT
      Indicates that the Legend should be drawn in the upper left portion of the map.
      See Also:

    • LEGEND_UPPER_CENTER

      static final int LEGEND_UPPER_CENTER
      Indicates that the Legend should be drawn in the upper center portion of the map.
      See Also:

    • LEGEND_UPPER_RIGHT

      static final int LEGEND_UPPER_RIGHT
      Indicates that the Legend should be drawn in the upper right portion of the map.
      See Also:

    • LEGEND_MIDDLE_LEFT

      static final int LEGEND_MIDDLE_LEFT
      Indicates that the Legend should be drawn in the middle left portion of the map.
      See Also:

    • LEGEND_MIDDLE_LEFT_OF_CENTER

      static final int LEGEND_MIDDLE_LEFT_OF_CENTER
      Indicates that the Legend should be drawn left of the middle left portion of the map.
      See Also:

    • LEGEND_MIDDLE_CENTER

      static final int LEGEND_MIDDLE_CENTER
      Indicates that the Legend should be drawn in the middle center portion of the map.
      See Also:

    • LEGEND_MIDDLE_RIGHT_OF_CENTER

      static final int LEGEND_MIDDLE_RIGHT_OF_CENTER
      Indicates that the Legend should be drawn right of the middle right portion of the map.
      See Also:

    • LEGEND_MIDDLE_RIGHT

      static final int LEGEND_MIDDLE_RIGHT
      Indicates that the Legend should be drawn in the middle right portion of the map.
      See Also:

    • LEGEND_LOWER_LEFT

      static final int LEGEND_LOWER_LEFT
      Indicates that the Legend should be drawn in the lower left portion of the map.
      See Also:

    • LEGEND_LOWER_CENTER

      static final int LEGEND_LOWER_CENTER
      Indicates that the Legend should be drawn in the lower center portion of the map.
      See Also:

    • LEGEND_LOWER_RIGHT

      static final int LEGEND_LOWER_RIGHT
      Indicates that the Legend should be drawn in the lower right portion of the map.
      See Also:

    • LEGEND_DRAW_ZOOMED

      static final int LEGEND_DRAW_ZOOMED
      Indicates that the Legend should be drawn when zoomed.
      See Also:

    • LEGEND_NO_DRAW_ZOOMED

      static final int LEGEND_NO_DRAW_ZOOMED
      Indicates that the Legend should not be drawn when zoomed.
      See Also:

    • LEGEND_ITEM_ALIGN_LEFT

      static final int LEGEND_ITEM_ALIGN_LEFT
      Indicates that the LegendItem text should be aligned to the left.
      See Also:

    • LEGEND_ITEM_ALIGN_CENTER

      static final int LEGEND_ITEM_ALIGN_CENTER
      Indicates that the LegendItem text should be aligned to the center.
      See Also:

    • LEGEND_ITEM_ALIGN_RIGHT

      static final int LEGEND_ITEM_ALIGN_RIGHT
      Indicates that the LegendItem text should be aligned to the right.
      See Also:

    • BOUNDS_RULER

      static final int BOUNDS_RULER
      Indicates that the LabelBounds encloses a tick mark.
      See Also:

    • BOUNDS_FEATURE

      static final int BOUNDS_FEATURE
      Indicates that the labelBounds encloses a feature label.
      See Also:

    • BOUNDS_BUTTON

      static final int BOUNDS_BUTTON
      Indicates that the labelBounds encloses a button.
      See Also: