Package ca.ualberta.stothard.cgview

package ca.ualberta.stothard.cgview

Class	Description
Cgview	Represents a circular map of a DNA sequence.
CgviewConstants	The CgviewConstants interface provides constants for use in the ca.ualberta.stothard.cgview package.
CgviewFactory	This class reads an XML document and creates a Cgview object.
CgviewFactoryPtt	This class reads a tab-delimited feature file and creates a Cgview object.
CgviewFactoryTab	This class reads a tab-delimited feature file and creates a Cgview object.
CgviewHTMLDocument	This class contains methods for constructing HTML pages that contain Cgview maps.
CgviewIO	This class contains static methods for converting Cgview objects to image files.
Feature	This class represents a sequence feature.
FeatureRange	This class is used to assign sequence features, which are described using the Feature object, to specific bases of a DNA sequence.
FeatureSlot	Represents a slot of space on the Cgview map.
FileMover	This class contains methods for moving jar resources to the output directory.
InnerLabel	This class is used by Cgview objects to facilitate label layout and drawing.
Label	This class is used by Cgview objects to facilitate label layout and drawing.
LabelBounds	This class is used to store bounds information about text already drawn on a Cgview map.
Legend	This class is used add legends to a Cgview map.
LegendItem	This class is used to add text entries to Legend objects.
OuterLabel	This class is used by Cgview objects to facilitate label layout and drawing.
Plasmid
SeriesImage	This class is used to encapsulate Cgview map information when a series of images is linked together.
SortLabelsByForceLabel	Sorts Label objects so that those where Label.getForceLabel() returns true are last.
SortLabelsByRadians	Sorts Label objects so that those with smaller Label.getLineStartRadians() values are first.
SortLabelsByRadiansShift	Sorts Label objects so that those that those with the smallest absolute difference between Label.getLineStartRadians() and Label.getLineEndRadians() are first.
SortLabelsByRadius	Sorts Label objects so that those that those furthest from the sequence backbone are first.
SortSeriesImageByZoomCenter	Sorts SeriesImage objects so that those with the lowest zoom center value are first.